mean_variance_plot: This function returns 2 plots to assess the mean-variance...

In Single-Cell-Genomics-Group-CNAG-CRG/SCrafty-package: R package to store useful functions to analyze single-cell data that the entire team can benefit

This function returns 2 plots to assess the mean-variance relationship of the count data.

Description

This function returns 2 plots to assess the mean-variance relationship of the count data.

Usage

mean_variance_plot(se_obj, assay, slot)

Arguments

se_obj	Seurat object we want to assess.
assay	assay from where we want to extract the count matrix.
slot	slot from where we want to extract the count matrix.

Value

patchwork object with 2 plots

Examples

## Not run: 
library(Seurat)
library(dplyr)
data("pbmc_small")
mean_variance_plot(se_obj = pbmc_small, assay = "RNA", slot = "counts")

## End(Not run)

Single-Cell-Genomics-Group-CNAG-CRG/SCrafty-package documentation built on Aug. 20, 2022, 9:29 a.m.