get_frac_intra: Get fraction of intra-facility pairs for different SNV...
In Snitkin-Lab-Umich/regentrans: A framework and R package for using genomics to study regional pathogen transmission
View source: R/get_frac_intra.R
get_frac_intra R Documentation
Get fraction of intra-facility pairs for different SNV thresholds
Description
Get fraction of intra-facility pairs for different SNV thresholds
Usage
get_frac_intra(pair_types)
Arguments
pair_types
the output object of the get_pair_types function
Value
fraction of intra-facility pairs for each SNV distance in dataset
Examples
## Not run:
locs <- metadata %>% dplyr::select(isolate_id, facility) %>% tibble::deframe()
pair_types <- get_pair_types(dists, locs)
get_frac_intra(pair_types)
## End(Not run)
Snitkin-Lab-Umich/regentrans documentation built on Jan. 29, 2023, 7:45 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/get_frac_intra.R
| get_frac_intra | R Documentation |
Get fraction of intra-facility pairs for different SNV thresholds
Description
Get fraction of intra-facility pairs for different SNV thresholds
Usage
get_frac_intra(pair_types)
Arguments
pair_types |
the output object of the get_pair_types function |
Value
fraction of intra-facility pairs for each SNV distance in dataset
Examples
## Not run: locs <- metadata %>% dplyr::select(isolate_id, facility) %>% tibble::deframe() pair_types <- get_pair_types(dists, locs) get_frac_intra(pair_types) ## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.