cran-comments.md

In SomaLogic/SomaDataIO: Input/Output 'SomaScan' Data

Submission 6.2.0

• This is a submission to an existing CRAN package.

• It contains feature upgrades, minor internal bug-fixes, and improved documentation.

Reverse Dependencies

• There are no reverse dependencies.

• One package, SomaScan.db, has a reverse Suggests.

• It is an associated BioConductor package which we also maintain.

R CMD check results

0 errors | 0 warnings | 2 notes

Notes

The following notes were displayed during devtools::check(remote = TRUE, manual = TRUE):

❯ checking CRAN incoming feasibility ... [7s/72s] NOTE
  Maintainer: ‘Caleb Scheidel <[e-mail]>’

  New maintainer:
    Caleb Scheidel <[e-mail]>
  Old maintainer(s):
    Stu Field <[e-mail]>

❯ checking installed package size ... NOTE
    installed size is  6.0Mb
    sub-directories of 1Mb or more:
      data      3.8Mb
      extdata   1.1Mb

Package Size

• Package tarball from R CMD build is 4.2Mb

Example Timings from Win-builder

name                  user  system  elapsed
Col.Meta              0.23  0.01    0.25    
SeqId                 0.03  0.02    0.05    
SomaDataIO-package    0.08  0.02    0.10    
SomaScanObjects       0.25  0.00    0.25    
adat-helpers          0.05  0.00    0.04    
adat2eSet             0.31  0.04    0.36    
addClass              0     0       0   
calc_eLOD             0.01  0.00    0.01    
cleanNames            0     0       0   
diffAdats             0.33  0.00    0.33    
getAnalyteInfo        0.11  0.00    0.11    
getAnalytes           0.02  0.00    0.01    
groupGenerics         0.28  0.00    0.28    
is_intact_attr        0     0       0   
is_seqFormat          0     0       0   
lift_adat             0.25  0.02    0.26    
loadAdatsAsList       1.36  0.00    1.36    
merge_clin            0.08  0.00    0.08    
parseHeader           0.08  0.01    0.09    
pivotExpressionSet    0.07  0.00    0.06    
read_adat             1.22  0.00    1.22    
read_annotations      0     0       0   
rownames              0     0       0   
soma_adat             0.2   0.0     0.2 
transform             0     0       0   
write_adat            0.24  0.01    0.25

SomaLogic/SomaDataIO documentation built on Feb. 8, 2025, 12:19 p.m.