tests/testthat/_snaps/diffAdats.md

In SomaLogic/SomaDataIO: Input/Output 'SomaScan' Data

diffAdats() generates 'all-passing' output with equal ADATs

Code
  diffAdats(adat, adat)
Output
  == Checking ADAT attributes & characteristics ==================================
Message
  > Attribute names are identical       v
  > Attributes are identical            v
  > ADAT dimensions are identical       v
  > ADAT row names are identical        v
  > ADATs contain identical Features    v
  > ADATs contain same Meta Fields      v
Output
  -- Checking the data matrix ----------------------------------------------------
Message
  > All Clinical data is identical      v
  > All Feature data is identical       v
Output
  ================================================================================

diffAdats() generates correct output with 1 analyte missing

Code
  diffAdats(adat, adat[, -9L])
Output
  == Checking ADAT attributes & characteristics ==================================
Message
  > Attribute names are identical       v
  > Attributes are identical            x
  > ADAT dimensions are identical       x
  >   ADATs have same # of rows         v
  >   ADATs have same # of columns      x
  >   ADATs have same # of features     x
  >   ADATs have same # of meta data    v
  > ADAT row names are identical        v
  > ADATs contain identical Features    x
  > ADATs contain same Meta Fields      v
Output
  Features in 'adat' but not 'adat[, -9L]':
           seq.3333.33

Message
  v Continuing on the "*INTERSECT*" of ADAT columns
Output
  -- Checking the data matrix ----------------------------------------------------
Message
  > All Clinical data is identical      v
  > All Feature data is identical       v
Output
  ================================================================================

diffAdats() generates correct output with 1 clin variable missing

Code
  diffAdats(adat, adat[, -3L])
Output
  == Checking ADAT attributes & characteristics ==================================
Message
  > Attribute names are identical       v
  > Attributes are identical            x
  > ADAT dimensions are identical       x
  >   ADATs have same # of rows         v
  >   ADATs have same # of columns      x
  >   ADATs have same # of features     v
  >   ADATs have same # of meta data    x
  > ADAT row names are identical        v
  > ADATs contain identical Features    v
  > ADATs contain same Meta Fields      x
Output
  Meta data in 'adat' but not 'adat[, -3L]':
              Subarray

Message
  v Continuing on the "*INTERSECT*" of ADAT columns
Output
  -- Checking the data matrix ----------------------------------------------------
Message
  > All Clinical data is identical      v
  > All Feature data is identical       v
Output
  ================================================================================

diffAdats() generates correct output with 1 clin variable added

Code
  diffAdats(adat, new)
Output
  == Checking ADAT attributes & characteristics ==================================
Message
  > Attribute names are identical       v
  > Attributes are identical            x
  > ADAT dimensions are identical       x
  >   ADATs have same # of rows         v
  >   ADATs have same # of columns      x
  >   ADATs have same # of features     v
  >   ADATs have same # of meta data    x
  > ADAT row names are identical        v
  > ADATs contain identical Features    v
  > ADATs contain same Meta Fields      x
Output
  Meta data in 'new' but not 'adat':
                   foo

Message
  v Continuing on the "*INTERSECT*" of ADAT columns
Output
  -- Checking the data matrix ----------------------------------------------------
Message
  > All Clinical data is identical      v
  > All Feature data is identical       v
Output
  ================================================================================

diffAdats() generates correct output with 1 variable changed

Code
  diffAdats(adat, dplyr::mutate(adat, Subarray = rev(Subarray)))
Output
  == Checking ADAT attributes & characteristics ==================================
Message
  > Attribute names are identical       v
  > Attributes are identical            v
  > ADAT dimensions are identical       v
  > ADAT row names are identical        v
  > ADATs contain identical Features    v
  > ADATs contain same Meta Fields      v
Output
  -- Checking the data matrix ----------------------------------------------------
Message
  > All Clinical data is identical      x
Output
      No. fields that differ            1
  -- Clinical data diffs ---------------------------------------------------------
  [1] "'Subarray'"
Message
  > All Feature data is identical       v
Output
  ================================================================================

diffAdats() generates correct output 2 random values changed

Code
  diffAdats(adat, new)
Output
  == Checking ADAT attributes & characteristics ==================================
Message
  > Attribute names are identical       v
  > Attributes are identical            v
  > ADAT dimensions are identical       v
  > ADAT row names are identical        v
  > ADATs contain identical Features    v
  > ADATs contain same Meta Fields      v
Output
  -- Checking the data matrix ----------------------------------------------------
Message
  > All Clinical data is identical      v
  > All Feature data is identical       x
Output
      No. fields that differ            2
  -- Feature data diffs ----------------------------------------------------------
  [1] "'seq.1234.56', 'seq.9898.99'"
  ================================================================================

SomaLogic/SomaDataIO documentation built on Feb. 8, 2025, 12:19 p.m.