API for SoniaTC/NOISeq
Exploratory analysis and differential expression for RNA-seq data
| Global functions | |
|---|---|
| .calcFactorWeighted | Source code |
| .calcNormFactors | Source code |
| .onAttach | Source code |
| ARSyNcomponents | Source code |
| ARSyNmodel | Source code |
| ARSyNseq | Man page Source code |
| ASCA.1f | Source code |
| ASCA.2f | Source code |
| ASCA.3f | Source code |
| Biodetection | Man page |
| Biodetection-class | Man page |
| CD | Man page |
| CD-class | Man page |
| CV | Source code |
| CountsBio | Man page |
| CountsBio-class | Man page |
| DE.plot | Man page |
| GCbias | Man page |
| GCbias-class | Man page |
| Output | Man page |
| Output-class | Man page |
| PCA | Man page |
| PCA-class | Man page |
| PCA.GENES | Man page Source code |
| QCreport | Man page |
| Saturation | Man page |
| Saturation-class | Man page |
| addData | Man page Source code |
| arsynseq | Man page |
| biodetection.dat | Source code |
| biodetection.plot | Source code |
| dat | Man page |
| dat2save | Man page |
| dat2save,Biodetection-method | Man page |
| dat2save,CD-method | Man page |
| dat2save,CountsBio-method | Man page |
| dat2save,GCbias-method | Man page |
| dat2save,PCA-method | Man page |
| dat2save,Saturation-method | Man page |
| dat2save,lengthbias-method | Man page |
| data2report | Source code |
| degenes | Man page |
| explo.plot | Man page |
| explo.plot,Biodetection-method | Man page |
| explo.plot,CD-method | Man page |
| explo.plot,CountsBio-method | Man page |
| explo.plot,GCbias-method | Man page |
| explo.plot,PCA-method | Man page |
| explo.plot,Saturation-method | Man page |
| explo.plot,lengthbias-method | Man page |
| filtered.data | Man page Source code |
| int.mult | Source code |
| lengthbias | Man page |
| lengthbias-class | Man page |
| make.ASCA.design | Source code |
| myCounts | Man page |
| myCounts-class | Man page |
| mybiotypes | Man page |
| mychroms | Man page |
| mycounts | Man page |
| mydata | Man page |
| myfactors | Man page |
| mygc | Man page |
| mylength | Man page |
| mynoiseq | Man page |
| mypretty | Source code |
| noiseq | Man page |
| noiseqbio | Man page |
| plot.y2 | Source code |
| ranking | Source code |
| readData | Man page |
| rpkm | Man page |
| saturation | Man page |
| saturation.plot | Source code |
| show,Biodetection-method | Man page |
| show,CD-method | Man page |
| show,CountsBio-method | Man page |
| show,GCbias-method | Man page |
| show,Output-method | Man page |
| show,PCA-method | Man page |
| show,Saturation-method | Man page |
| show,lengthbias-method | Man page |
| sim.samples | Source code |
| tmm | Man page |
| uqua | Man page |
