example: Example of objects used and created by the NOISeq package

In SoniaTC/NOISeq: Exploratory analysis and differential expression for RNA-seq data

Description

This is a quick view of the objects generated by the package. To take a look, see the usage information. These objects have been created from Marioni's reduce dataset (only chromosomes I to IV).

Usage

# To load the object myCounts generated by the readData() function from R objects containing expression data, the factors describing the experimental conditions to be studied, the feature length, the feature biotypes, the chromosome and the position:
data(myCounts)

# To load the object generated after running the noiseq() function to compute differential expression:
data(noiseq)

References

Marioni, J.C. and Mason, C.E. and Mane, S.M. and Stephens, M. and Gilad, Y. (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Research, 18: 1509–1517.

SoniaTC/NOISeq documentation built on July 28, 2020, 6:31 p.m.