Files in SoniaTC/NOISeq

Exploratory analysis and differential expression for RNA-seq data

R/ARSyNcomponents.R R/ARSyNmodel.R R/ARSyNseq.R R/ASCA1f.R R/ASCA2f.R R/ASCA3f.R R/ASCAfun-triple.R R/ASCAfun1.R R/ASCAfun12.R R/ASCAfun2.R R/ASCAfunres.R R/DE.plot.R R/GC.bias.plot.R R/MD.R R/MD.plot.R R/PCA.GENES.R R/PCA.plot.R R/QCreport.R R/allMD.R R/auxiliar.R R/biodetection.plot.R R/cd.plot.R R/classes.R R/countsbio.plot.R R/dat.R R/degenes.R R/fewreplicates.R R/filter.low.counts.R R/length.bias.plot.R R/makeASCAdesign.R R/noiseq.R R/noiseqbio.R R/normalization.R R/probdeg.R R/readData.R R/saturation.plot.R R/zzz.R inst/doc/QCreport.pdf man/ARSyNSeq.Rd man/Biodetection.Rd man/CD.Rd man/CountsBio.Rd man/DE.plot.Rd man/GCcontentBias.Rd man/LengthBias.Rd man/Marioni.Rd man/Output.Rd man/PCA.GENES.Rd man/PCA.Rd man/QCreport.Rd man/Saturation.Rd man/dat.Rd man/dat2save.Rd man/degenes.Rd man/example.Rd man/explo.plot.Rd man/filter.low.counts.Rd man/myCounts.Rd man/noiseq.Rd man/noiseqbio.Rd man/normalization.Rd man/readData.Rd