Man pages for SoniaTC/NOISeq
Exploratory analysis and differential expression for RNA-seq data
| ARSyNSeq | ASCA Removal of Systematic Noise on Seq data |
| Biodetection | Biodetection class |
| CD | CD class |
| CountsBio | CountsBio class |
| dat | Exploration of expression data. |
| dat2save | Saving data generated for exploratory plots. |
| degenes | Recovering differencially expressed features. |
| DE.plot | Plotting differential expression results |
| example | Example of objects used and created by the NOISeq package |
| explo.plot | Exploratory plots for expression data. |
| filter.low.counts | Methods to filter out low count features |
| GCcontentBias | GCbias class |
| LengthBias | lengthbias class |
| Marioni | Marioni's dataset |
| myCounts | Class myCounts |
| noiseq | Differential expression method for technical replicates or no... |
| noiseqbio | Differential expression method for biological replicates |
| normalization | Normalization methods |
| Output | Output class of NOISeq |
| PCA | PCA class |
| PCA.GENES | Principal Component Analysis |
| QCreport | Quality Control report for expression data |
| readData | Creating an object of eSet class |
| Saturation | Saturation class |
