pulseox_invalid: Getting Invalid Examples and Summaries for...

In SophiaLC/IHI_DQ: A Data Quality Report Generator for NSSP BioSense Platform

Description

This function will generate two data frames: first, a frame to be used later to extract invalid examples from; second, a frame that contains facility-level summaries for counts and percentages of pulse oximetry invalids. The valid values were taken from the 'PHVS_PulseOximetryUnit_UCUM_V1.xls' file from Public Health Information Network Vocabulary Access and Distribution System value sets. This function will do four invalid checks: Initial_Pulse_Oximetry is considered invalid if it is above 100 or less than 50; Initial_Pulse_Oximetry_Units are considered invalid if they are not in the valid concept names; Initial_Pulse_Oximetry is considered invalid if Units are not reported; lastly, Initial_Pulse_Oximetry_Units are considered invalid if a corresponding Initial_Pulse_Oximetry is not reported.

Usage

pulseox_invalid(data)

Arguments

data	The raw data from BioSense on which you will do the invalid pulse oximetry checks.

Details

You can view the concept names that are considered valid by calling data("pulse_oximetry_units").

Value

A list of two data frames: examples and summary for Initial_Pulse_Oximetry and Initial_Pulse_Oximetry_Units.

SophiaLC/IHI_DQ documentation built on Oct. 23, 2020, 2:35 a.m.