In SridharJagannathan/natverse: Install all NeuroAnatomy Toolbox packages

options(htmltools.dir.version = FALSE)

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Motivation

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Why?

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• nat $\rightarrow$ nat, elmr, catmaid, nat.nblast, ... catnat

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• Knowledge gap
  

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multiverse

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htmltools::tags$iframe(id="frame1", title = "Multiverse", src = "nat_packages_all.html", 
                       width = "800px", height = "550px")

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tidyverse

• Ease of installation, maintenance¹
  
  

.footnote[ [1] Tidyverse rationale [#1](https://rviews.rstudio.com/2017/06/08/what-is-the-tidyverse/)]

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Enter natverse

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background-image: url("./natverse_logo.png") background-size: 30%

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htmltools::tags$iframe(id="frame2", title = "natverse", src = "natverse_packages_all.html", 
                       width = "800px%", height = "550px")

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Hello World

Install the natverse package from Github:

devtools::install_github("SridharJagannathan/natverse")

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Prerequisites.

• Recommended to use R-studio

• Install devtools from CRAN beforehand

 install.packages("devtools") 

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Using natverse

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• loading

 library(natverse) 

 library(natverse) 

• finding conflicts

  The conflicts created by natverse with other packages can be seen with

 natverse_conflicts()

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updating packages:

For dependencies installed via CRAN use

 natverse_update(source = 'CRAN')

For dependencies installed via Github use

 natverse_update(source = 'GITHUB')

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Thanks!

The natverse package was influenced by,

• Tidyverse (opinionated collection of essentials)

• dtupdate (Keep Up-To-Date with Non-CRAN Package Updates)

• hexSticker (Create hex logos from png)

• Slides created via the R package xaringan.

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Thanks!

This work was supported by,

• Gregory Jefferis

• Alexander Bates

• Philipp Schlegel

• Marta Costa

SridharJagannathan/natverse documentation built on July 28, 2019, 3:26 p.m.