correctUndercalledHets: Correct undercalled heterozygous sites based on flanking...
In StefanReuscher/ABHgenotypeR: Easy Visualization of ABH Genotypes
Description
Usage
Arguments
Value
Examples
Description
Correct undercalled heterozygous sites based on flanking alleles.
Usage
1
correctUndercalledHets(inputGenos = "genotypes", maxHapLength = 1)
Arguments
inputGenos
A genotypes list object.
maxHapLength
The maximum length of not heterozygous stretches flanked
by heterzygous sites that are changed to heterozygous. If set to 1
(default) only HAH or HBH will be corrected. If set to 2, both HAH and HAAH
(or HBH and HBBH) will be corrected.
Value
A genotype object in which undercalled heterozygous sites are
corrected if both flanking alleles match.
Examples
1
## Not run: corrUndHetsGenos <- correctUndercalledHets(genotypes, maxHapLength = 3)
StefanReuscher/ABHgenotypeR documentation built on May 9, 2019, 3:05 p.m.
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Description Usage Arguments Value Examples
Description
Correct undercalled heterozygous sites based on flanking alleles.
Usage
1 | correctUndercalledHets(inputGenos = "genotypes", maxHapLength = 1)
|
Arguments
inputGenos |
A genotypes list object. |
maxHapLength |
The maximum length of not heterozygous stretches flanked by heterzygous sites that are changed to heterozygous. If set to 1 (default) only HAH or HBH will be corrected. If set to 2, both HAH and HAAH (or HBH and HBBH) will be corrected. |
Value
A genotype object in which undercalled heterozygous sites are corrected if both flanking alleles match.
Examples
1 | ## Not run: corrUndHetsGenos <- correctUndercalledHets(genotypes, maxHapLength = 3)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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