ReportFdaSOP: Report SOP test

In StoXProject/RstoxFDA: Fisheries Dependent Analysis with RstoX

Report SOP test

Description

Report sum-of-product test (SOP-test) for catch estimates.

Mean weight at age and estimated catch (numbers) at age is used to compute total catches and the relative difference to reported landings are reported. Missing values (NAs) are ignored (exlcuded from sums).

The report will be generated for landings decomposed on the provided 'GroupingVariables' which must be available in both 'ReportFdaCatchAtAgeData' and 'ReportFdaWeightAtAgeData' and 'StoxLandingData'.

'ReportFdaCatchAtAgeData' and 'ReportFdaWeightAtAgeData' must be decomposed on the same 'GroupingVariables' and must be reported for the same age groups

Rounding of numbers according to the argument 'Decimals' is done with round, so that negative numbers specify rounding to powers of ten, and rounding of the digit 5 is towards the even digit.

The units considered valid for mean lengths are those listed for quantity 'fraction' in StoxUnits

Usage

ReportFdaSOP(
  ReportFdaCatchAtAgeData,
  ReportFdaWeightAtAgeData,
  StoxLandingData,
  GroupingVariables = character(),
  DecimalWeight = integer(),
  DecimalFraction = integer(),
  UnitFraction = RstoxData::getUnitOptions("fraction")
)

Arguments

ReportFdaCatchAtAgeData	ReportFdaCatchAtAgeData with estimates of total catch at age
ReportFdaWeightAtAgeData	ReportFdaWeightAtAgeData with estimates of mean weight at age for individual fish
StoxLandingData	StoxLandingData data with landings from fisheries
GroupingVariables	Columns of 'StoxLandingData' that partitions the landings into groups SOP tests should be reported for.
DecimalWeight	integer specifying the number of decimals to report for weights: 'TotalWeightEstimated', 'LandedWeight', and 'Difference'. Defaults to 'r RstoxFDA:::stoxFunctionAttributes$ReportFdaSOP$functionParameterDefaults$DecimalWeight'.
DecimalFraction	integer specifying the number of decimals to report for 'RelativeDifference'. Defaults to 'r RstoxFDA:::stoxFunctionAttributes$ReportFdaSOP$functionParameterDefaults$DecimalFraction'.
UnitFraction	unit for the RelativeDifference. E.g. '0.' for decimal notation or '%' for percent.

Value

ReportFdaSopData

See Also

ReportRecaWeightAtAge and ReportRecaCatchAtAge for some ways of preparing 'ReportFdaWeightAtAgeData' and 'ReportFdaCatchAtAgeData'. StoxLanding and FilterStoxLanding for ways of preparing 'StoxLandingData'.

Examples

 catchAtAge <- RstoxFDA::ReportRecaCatchAtAge(RstoxFDA::RecaCatchAtAgeExample)
 weightAtAge <- RstoxFDA::ReportRecaWeightAtAge(RstoxFDA::RecaCatchAtAgeExample)
 sop <- ReportFdaSOP(catchAtAge, weightAtAge, RstoxFDA::StoxLandingDataExample, 
      DecimalFraction = 6)
 sop$SopReport

StoXProject/RstoxFDA documentation built on Jan. 13, 2024, 12:32 a.m.