ReportRecaParameterStatistics: Report summary statistics for Reca paramters

In StoXProject/RstoxFDA: Fisheries Dependent Analysis with RstoX

Report summary statistics for Reca paramters

Description

Reports means and variances over iterations run for Reca parameterization, which may be used as input to convergence checks.

Usage

ReportRecaParameterStatistics(
  RecaParameterData,
  ParameterizationSummaryData,
  AppendReport = FALSE
)

Arguments

RecaParameterData	Simulated Reca parameters
ParameterizationSummaryData	summary of Reca parameters that the results should be appended to. Optional.
AppendReport	if true, the results are appended to another report provided by 'ParameterizationSummaryData'

Details

Multiple chains may be aggregated into one summary table, by repeatedly applying this function with the aggregated result provided as the argument 'ParameterizationSummaryData'. This requires that chains are different, and that they are run for the same number of iterations.

Parameters in the summary are identified with the following notation: \<model name\>-\<covariate name\>-\<any covariate value/level\>:\<any Age group\> \<parameter type\>, e.g: 'ProportionAtAgeModel-Area:47:Age:2 Intercept ' for the intercept of age 2 in area 47 in the Proportion-At-Age model.

Value

ParameterizationSummaryData

See Also

ParameterizeRecaModels for model parameterisation ReportParameterConvergence for convergence checks.

StoXProject/RstoxFDA documentation built on Nov. 12, 2024, 3:42 a.m.