lfa-deprecated: Deprecated functions in package 'lfa'.

In StoreyLab/lfa: Logistic Factor Analysis for Categorical Data

Deprecated functions in package lfa.

Description

The functions listed below are deprecated and will be defunct in the near future. When possible, alternative functions with similar functionality are also mentioned. Help pages for deprecated functions are available at help("<function>-deprecated").

Usage

center(A)

model.gof(X, LF, B)

read.bed(bed.prefix)

read.tped.recode(tped.filename, buffer.size = 5e+08)

Value

Function-dependent

center

For center, use function(x) x - rowMeans(x).

model.gof

For model.gof, use sHWE().

read.bed

For read.bed, use genio::read_plink().

read.tped.recode

For read.tped.recode, use plink (external binary) to convert to BED/BIM/FAM, then parse with genio::read_plink().

StoreyLab/lfa documentation built on June 10, 2025, 9:34 a.m.