In StuartWheater/dsMicrobiome: DataSHIELD Microbiome Server Functions Prototype

Deployment dsMicrobiome

Using opalr::dsadmin.install_login_package to deploy DataSHIELD's dsMicrobiome packages

Requirements

• Opal 4.0.2 (server - service)
• opalr 2.0.0 (client - R Package)
• vegan 2.5-7 (server - R Package)

Load packages

library(devtools)
library(opalr)

Build new version of dsBase

buildfile_location <- devtools::build()
print(buildfile_location)

Log into Opal

Note this uses opalr's login not DSI's login

opal <- opalr::opal.login('administrator', 'datashield_test&', url = 'http://192.168.56.100:8080/')
print(opal)

Deploy new dsBase package

opalr::dsadmin.install_local_package(opal, buildfile_location)

Log out of Opal

opalr::opal.logout(opal)

StuartWheater/dsMicrobiome documentation built on Dec. 18, 2021, 3:02 p.m.