Man pages for Swarchal/phenoDist
Distance Measurements in Phenotypic Screening
| angsim_to_cossim | Convert angular similarity to cosine similarity |
| angular_similarity | Angular similarity |
| average_vector | Calculates and average vector |
| bhatt_dist | Bhattacharyya distance |
| centre_control | Shift co-ordinates to centre on a compounds centroid |
| cosine_pairs | Calculate pairs of cosine similarities between replicates |
| cosine_sim | Cosine similarity |
| cosine_sim_mat | Creates a cosine similarity matrix |
| cosine_sim_vector | Cosine similarity between two vectors |
| cossim_to_angsim | Convert cosine similarity to angular similarity |
| euclid_dist | Euclidean distance between two vectors |
| fold_180 | Constrains numbers to 180 |
| get_featuredata | Get featuredata columns |
| mahal_dist | Mahalanobis Distance |
| manhattan | Manhattan distance between two vectors |
| manhattan_norm | Normalised Manhattan distance |
| multi_z | Multivariate Z-prime |
| norm_vec | norm of a vector |
| norm_vector | Calculate the norm (or length) of a vector |
| return_features | Return features describing an eigenvector |
| r_zscore | Robust Z-score |
| scale_features | Scale feature data |
| ssmd | Strictly standardised mean difference (SSMD) |
| ssmd_effect_message | ssmd effect size description |
| theta | Angle between two vectors |
| theta0 | Angle between a vector and the origin |
| theta0_ | Angle between the vector and the origin |
| z_factor | Calculates a Z-factor for two distributions |
| z_factor_scan | Multiple z-factor calculations |
| zscore | Z-score |
