med_smooth: 2-way median smooth

In Swarchal/platetools: Tools and Plots for Multi-Well Plates

2-way median smooth

Description

Given a platemap produced by plate_map, will return a dataframe with after values have been transformed into a matrix mirroring the plate structure and undergoing a 2-way median polish to remove row or column effects

Usage

med_smooth(
  platemap,
  plate,
  eps = 0.01,
  maxiter = 10,
  trace.iter = FALSE,
  na.rm = TRUE,
  normalise = FALSE
)

Arguments

platemap	dataframe produced by plate_map
plate	numeric, number of wells in plate, either 96 or 384
eps	real number greater than 0. A tolerance for divergence
maxiter	int, the maximum number of iterations
trace.iter	Boolean, should progress in convergence be reported?
na.rm	Boolean, should missing values be removed?
normalise	Boolean, should the data be divided by the MAD?

Value

A dataframe consisting of two column, wellID and polished numeric values

Swarchal/platetools documentation built on March 7, 2024, 10 p.m.