Files in SwissTPH/VivaxModelR
Simulation of Plasmodium Vivax dynamics

.Rbuildignore
.github/.gitignore
.github/workflows/pkgdown.yaml
.github/workflows/r.yml
.github/workflows/test_coverage.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/CalculateFromData.R R/CalculateFromDataDelay.R R/CalculateFromDataRCD.R R/VivaxFunctions.R R/VivaxFunctionsDelays.R R/VivaxFunctionsMDA.R R/VivaxFunctionsRCD.R R/VivaxFunctionsSto.R R/VivaxModelR-package.R R/aux_functions.R R/sanity_checks.R R/simulate_interventions.R R/utils-pipe.R README.md
VivaxModelR.Rproj
_pkgdown.yml
demo/figures_SimulatedExample/example_complete.R demo/figures_SimulatedExample/functions_IRS_parameters.R demo/figures_SimulatedExample/helper_functions.R demo/figures_UsingObservedIncidence/compare_nekkab2021.R demo/figures_UsingObservedIncidence/functions_for_SA.R demo/figures_UsingObservedIncidence/main_vivax_SA.R demo/figures_UsingObservedIncidence/validity_conditions.R
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/index.html
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man/VivaxModelR-package.Rd man/calculate_h1_rcd.Rd man/calculate_r0_rc_fromdata.Rd man/calculate_r0_rc_fromdata_delay.Rd man/calculate_r0_rc_fromdata_delay_rcd.Rd man/calculate_r0_rc_fromdata_rcd.Rd man/calculate_tau_rcd.Rd man/calibrate_vivax_equilibrium.Rd man/create_approximation.Rd man/format_data_simulation.Rd man/get_equilibrium_states_vivax.Rd man/get_equilibrium_states_vivax_delay.Rd man/get_equilibrium_states_vivax_rcd.Rd man/get_equilibrium_states_vivax_rcd_no_referral.Rd man/get_equilibrium_states_vivax_rcd_referral.Rd man/get_prop_relapse.Rd man/get_r0_vivax.Rd man/get_rc_vivax.Rd man/get_rc_vivax_delay.Rd man/get_validity_condition_vivax.Rd man/incidence_day2year.Rd man/incidence_year2day.Rd man/model_sto_vivax_delay.Rd man/model_sto_vivax_delay_mda.Rd man/model_sto_vivax_delay_rcd_no_referral.Rd man/model_sto_vivax_delay_rcd_no_referral_mda.Rd man/model_sto_vivax_delay_rcd_referral.Rd man/model_sto_vivax_delay_rcd_referral_mda.Rd man/ode_vivax_cm_importation_vc.Rd man/ode_vivax_delay.Rd man/ode_vivax_delay_mda.Rd man/ode_vivax_delay_rcd_no_referral.Rd man/ode_vivax_delay_rcd_no_referral_mda.Rd man/ode_vivax_delay_rcd_referral.Rd man/ode_vivax_delay_rcd_referral_mda.Rd man/ode_vivax_mda.Rd man/ode_vivax_rcd.Rd man/ode_vivax_rcd_mda.Rd man/pipe.Rd man/sample_uncertainty_incidence_import.Rd man/sanity_checks_inputs_calculate.Rd man/sanity_checks_inputs_simulate.Rd man/simulate_from_data.Rd man/simulate_from_data_delay.Rd man/simulate_vivax_delay_mda_ode.Rd man/simulate_vivax_delay_mda_sto.Rd man/simulate_vivax_delay_ode.Rd man/simulate_vivax_delay_sto.Rd man/simulate_vivax_interventions.Rd man/simulate_vivax_mda_ode.Rd man/simulate_vivax_ode.Rd man/solve_lambda_vivax.Rd man/solve_lambda_vivax_delay.Rd man/solve_lambda_vivax_rcd.Rd man/solve_lambda_vivax_rcd_no_referral.Rd man/solve_lambda_vivax_rcd_referral.Rd man/varying_tau.Rd man/vector_control_exponential_decay.Rd tests/testthat.R tests/testthat/test_R0.R tests/testthat/test_calculateFromData.R tests/testthat/test_calculateFromData_delay.R tests/testthat/test_calculateFromData_rcd.R tests/testthat/test_format_interventions.R tests/testthat/test_simul_mda.R tests/testthat/test_simul_rcd.R tests/testthat/test_simul_rcd_tv_tau.R tests/testthat/test_simul_sto.R tests/testthat/test_simul_sto_rcd.R tests/testthat/test_simulate_interventions.R tests/testthat/test_simulate_interventions_mda.R tests/testthat/test_solve.R tests/testthat/test_solve_delay.R tests/testthat/test_timevarying_delta.R tests/testthat/test_timevarying_vc.R
vignettes/.gitignore
vignettes/VivaxModelR_delayedtreatment_files/MathJax.js
vignettes/VivaxModelR_files/MathJax.js
vignettes/bibliography.json
vignettes/models_cartoon.png
vignettes/models_delay_cartoon.png
vignettes/vivaxmodelr.Rmd vignettes/vivaxmodelr_delay.Rmd vignettes/vivaxmodelr_dev_doc.Rmd
SwissTPH/VivaxModelR documentation built on Feb. 14, 2024, 11:27 a.m.