simulate_vivax_delay_mda_sto: Simulate vivax model with delay to treatment and MDA, with...

In SwissTPH/VivaxModelR: Simulation of Plasmodium Vivax dynamics

Simulate vivax model with delay to treatment and MDA, with stochastic model

Description

Simulates a draw of the chosen vivax stochastic model

Usage

simulate_vivax_delay_mda_sto(
  parameters,
  STOmodel = model_sto_vivax_delay(),
  STOmodel_mda = model_sto_vivax_delay_mda(),
  maxtime = 1465,
  year = FALSE,
  sto_method = "exact",
  runs = 1,
  seeds = NULL
)

Arguments

parameters	model parameters
STOmodel	stochastic model to be simulated (reactions)
STOmodel_mda	stochastic model with MDA to be simulated (during prophylaxis)
maxtime	maximal time step
year	if TRUE, aggregates outputs per year. if FALSE, returns daily output
sto_method	a scalarindicating which simulation method is used. Default ("exact") is Gillespie's direct method. Other options are "approximate" (tau-leap) or "mixed". cf. the documentation of the TiPS package for more information.
runs	number of draws of the stochastic model
seeds	a vector of the length of runs containing the seeds for each simulation (don't use "0" which has another use in TiPS)

Value

A dataframe containing the simulated model

SwissTPH/VivaxModelR documentation built on Feb. 14, 2024, 11:27 a.m.