| calculate_h1_rcd | Calculate h1 from aggregated incidence data |
| calculate_r0_rc_fromdata | Calculate R0 and Rc on an incidence dataset |
| calculate_r0_rc_fromdata_delay | Calculate R0 and Rc on an incidence dataset |
| calculate_r0_rc_fromdata_delay_rcd | Calculate R0 and Rc on an incidence dataset with delays and... |
| calculate_r0_rc_fromdata_rcd | Calculate R0 and Rc on an incidence dataset with RCD |
| calculate_tau_rcd | Calculate the targeting ratio from incidence data with... |
| calibrate_vivax_equilibrium | Calibrate the vivax model |
| create_approximation | Creates linear interpolation |
| format_data_simulation | Formating intervention parameters within a database |
| get_equilibrium_states_vivax | Calculate equilibrium state variables |
| get_equilibrium_states_vivax_delay | Calculate equilibrium state variables, in model with delay to... |
| get_equilibrium_states_vivax_rcd | Calculate equilibrium state variables |
| get_equilibrium_states_vivax_rcd_no_referral | Calculate equilibrium state variables, RCD model (no... |
| get_equilibrium_states_vivax_rcd_referral | Calculate equilibrium state variables, RCD model (referral) |
| get_prop_relapse | Calculate proportion of relapses |
| get_r0_vivax | R0 calculation |
| get_rc_vivax | Rc calculation, with case management and vector control |
| get_rc_vivax_delay | Rc calculation, with case management and vector control and... |
| get_validity_condition_vivax | Checks validity condition |
| incidence_day2year | Converts daily incidence to annual |
| incidence_year2day | Converts annual incidence to daily |
| model_sto_vivax_delay | Reaction associated with the vivax model with delays, in... |
| model_sto_vivax_delay_mda | Reaction associated with the vivax model with delays and MDA... |
| model_sto_vivax_delay_rcd_no_referral | Reaction associated with the vivax model with delays and RCD,... |
| model_sto_vivax_delay_rcd_no_referral_mda | Reaction associated with the vivax model with delays, RCD and... |
| model_sto_vivax_delay_rcd_referral | Reaction associated with the vivax model with delays and RCD,... |
| model_sto_vivax_delay_rcd_referral_mda | Reaction associated with the vivax model with delays, RCD and... |
| ode_vivax_cm_importation_vc | ODE vivax model with case management, importation and vector... |
| ode_vivax_delay | ODE vivax model with case management, importation and vector... |
| ode_vivax_delay_mda | ODE vivax model with case management, importation and vector... |
| ode_vivax_delay_rcd_no_referral | ODE vivax model with case management, RCD without referral,... |
| ode_vivax_delay_rcd_no_referral_mda | ODE vivax model with case management, RCD without referral,... |
| ode_vivax_delay_rcd_referral | ODE vivax model with case management, RCD with referral,... |
| ode_vivax_delay_rcd_referral_mda | ODE vivax model with case management, RCD with referral,... |
| ode_vivax_mda | ODE vivax model with case management, importation and vector... |
| ode_vivax_rcd | ODE vivax model with case management, RCD, importation and... |
| ode_vivax_rcd_mda | ODE vivax model with case management, RCD, importation and... |
| pipe | Pipe operator |
| sample_uncertainty_incidence_import | Samples uncertainty in incidence and importation data |
| sanity_checks_inputs_calculate | Check on the database input for calculating lambda at... |
| sanity_checks_inputs_simulate | Check on the database input for simulating the model on a... |
| simulate_from_data | Simulate the model for several values in a database |
| simulate_from_data_delay | Simulate from equilibrium, with delays in treatment |
| simulate_vivax_delay_mda_ode | Simulate vivax model with delay to treatment and MDA |
| simulate_vivax_delay_mda_sto | Simulate vivax model with delay to treatment and MDA, with... |
| simulate_vivax_delay_ode | Simulate vivax model with delay to treatment |
| simulate_vivax_delay_sto | Simulate vivax model with delay to treatment, with stochastic... |
| simulate_vivax_interventions | Simulate the effect of several interventions |
| simulate_vivax_mda_ode | Simulate vivax model with MDA |
| simulate_vivax_ode | Simulate vivax model |
| solve_lambda_vivax | Transmission rate calculation |
| solve_lambda_vivax_delay | Transmission rate calculation, in model with delay to... |
| solve_lambda_vivax_rcd | Transmission rate calculation |
| solve_lambda_vivax_rcd_no_referral | Transmission rate calculation |
| solve_lambda_vivax_rcd_referral | Transmission rate calculation |
| varying_tau | Function for time varying tau |
| vector_control_exponential_decay | Creates vector control exponential decay |
| VivaxModelR-package | VivaxModelR: Simulation of Plasmodium Vivax dynamics |
