bootstrapRegCoefs | Bootstrapped testing of regression coefficients in a... |
conforminput | Conform the dimensions of a new input data matrix to a... |
cv | Function that creates customized cross-validation folds |
cv.alpha | Cross-validation runs for risk predition at a single value of... |
cv.grid | Cross-validation runs for risk predition for a grid of... |
DREAM | FIMM-UTU DREAM winning implementation of an ensemble of... |
ePCR | Ensemble Penalized Cox Regression Modeling for Overall... |
heatcv | Plot a heatmap of the prediction performance statistic as a... |
integrateRegCurve | Integrate the area over/under the regularization path of a... |
interact.all | Compute all pairwise interactions between the columns of a... |
interact.part | Compute a chosen set of pairwise interactions between two... |
meanrank | Compute mean of predicted risk ranks for an ePCR ensemble |
NelsonAalen | Cox-Oakes extension of the Nelson-Aalen estimates for a Cox... |
normriskrank | Normalize ensemble risk scores to ranks and then to uniform... |
PEP-class | Penalized Ensemble Predictor (PEP) S4-class ensemble... |
PEP-methods | PEP-methods |
PSP-class | Penalized Single Predictor (PSP) S4-class as a member of... |
PSP-methods | PSP-methods |
score.cindex | Scoring function for evaluating survival prediction through... |
score.iAUC | Scoring function for evaluating survival prediction by... |
TimeSurvProb | Predict cumulative survival probabilities for new data at... |
TYKS | ePCR model fitted to the Turku University Hospital cohorts... |
TYKS_reduced | ePCR model fitted to the Turku University Hospital cohorts... |
TYKSSIMU | TYKSSIMU - simulated data matrices and survival responses... |
zt | Extended function for z-transformation, filling non-finite... |
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