Man pages for Syksy/ePCR
Ensemble Penalized Cox Regression for Survival Prediction

bootstrapRegCoefsBootstrapped testing of regression coefficients in a...
conforminputConform the dimensions of a new input data matrix to a...
cvFunction that creates customized cross-validation folds
cv.alphaCross-validation runs for risk predition at a single value of...
cv.gridCross-validation runs for risk predition for a grid of...
DREAMFIMM-UTU DREAM winning implementation of an ensemble of...
ePCREnsemble Penalized Cox Regression Modeling for Overall...
heatcvPlot a heatmap of the prediction performance statistic as a...
integrateRegCurveIntegrate the area over/under the regularization path of a...
interact.allCompute all pairwise interactions between the columns of a...
interact.partCompute a chosen set of pairwise interactions between two...
meanrankCompute mean of predicted risk ranks for an ePCR ensemble
NelsonAalenCox-Oakes extension of the Nelson-Aalen estimates for a Cox...
normriskrankNormalize ensemble risk scores to ranks and then to uniform...
PEP-classPenalized Ensemble Predictor (PEP) S4-class ensemble...
PEP-methodsPEP-methods
PSP-classPenalized Single Predictor (PSP) S4-class as a member of...
PSP-methodsPSP-methods
score.cindexScoring function for evaluating survival prediction through...
score.iAUCScoring function for evaluating survival prediction by...
TimeSurvProbPredict cumulative survival probabilities for new data at...
TYKSePCR model fitted to the Turku University Hospital cohorts...
TYKS_reducedePCR model fitted to the Turku University Hospital cohorts...
TYKSSIMUTYKSSIMU - simulated data matrices and survival responses...
ztExtended function for z-transformation, filling non-finite...
Syksy/ePCR documentation built on July 31, 2018, 11:16 a.m.