Man pages for SysBioChalmers/FALCONET
FAst visuaLisation of COmputational NETworks
| addBaseTypeIntoRxn | This function is used to give the "base" sign for two of... |
| changeFontSize | This function is used to adjust size of non base metabolite... |
| chooseRxnFromSubsystem | This function is used to choose the reaction based on... |
| chooseRxnFromSubsystem_new | This function is used to choose the reaction based on... |
| creatRedge | function to define the edge |
| creatRmap | function to creat the R graph based on the R platform |
| creatRnode | function to define the node in a R graph |
| DefineAllMet | The function is used to define the met in SBML file |
| DefineBaseMetabolite | Define the base reactant and product for cellDesigner |
| DefineCurrencyMet | This function is used to define the currency of metabolites... |
| defineFluxFoldColor | function to define the color based on the fold change |
| defineGeneFoldColor | function to define the color based on the fold change |
| DefineProtein | The function is used to define the general ID information of... |
| DeProteinConnect | The function is used to define the connection of general gene... |
| fluxFoldMapping | Function to mapping the flux fold changes onto the map |
| fluxMapping | Title |
| getAnnotation | Define annotation information for each metabolite |
| getCompositionNum | The function is used to extract the number of carbon based on... |
| getConnectedTransport | This function is used to get the id for the transport... |
| getConnectedTransport_new | Here is two new version of above two functions This function... |
| getGeneAnnotation | Define annotation information for each gene |
| getMetaboliteComposition | The fuction is used to extract the carbon part for a... |
| getMetType | This function is used to estimate the metabolite type in a... |
| getNewSize | Define the size of graph |
| getOtherProduct | The function is used to define the other product (except the... |
| getOtherReactant | The output of the followed function could be replaced of R2... |
| getPosition | Define position information for each metabolite |
| getProAnnotation | Define annotation information for each protein |
| getReactionMain | The output of the followed function could be replaced of R1... |
| getRxnInformation | Define the reaction metaid, baseReactant and baseProduct in... |
| hello | Hello, World! |
| omicsFoldMapping | Function to mapping the omics fold changes onto the map |
| prepareGPR | Title |
| prepareMET | This function is used to define the coordinate information... |
| prepareRXN | This function is to produce the rxn format used for... |
| produceInputForCellDesigner | The function is used to produce the cell designer file |
| removeRxnWithSingleMet | When removing the currency metabolites. some reaction could... |
| rxnGeneMapping | This function is used to establish the mappping between rxn... |
| splitAndCombine0 | This function is used to establish the single mapping between... |
| splitRxnToMetabolite | This function is used to split the reaction into the... |
| splitRxnToMetabolite.Ecoli | This function is used to split the reaction into the... |
| splitRxnToMetabolite.Yeast | This function is designed for yeast GEM to split the reaction |
