deadEndMetabolites-methods: Identify Dead End Metabolites

deadEndMetabolites-methodsR Documentation

Identify Dead End Metabolites

Description

Search a metabolic network for metabolites, which are produced, but not consumed and vice versa.

Usage

## S4 method for signature 'modelorg'
deadEndMetabolites(object,retIds)

Arguments

object

An object of class modelorg.

retIds

Boolean. If set to TRUE, a list containing metabolite id's will be returned, otherwise a list of logical vectors.
Default: TRUE.

Value

A list will be returned:

dem

dead end metabolites

der

reactions containing dead end metabolites

Methods

signature(object = "modelorg")

method to use with class modelorg.

Author(s)

Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>

Maintainer: Mayo Roettger <mayo.roettger@hhu.de>

See Also

Class modelorg and readTSVmod.


SysBioChalmers/sybil documentation built on Aug. 24, 2023, 1:08 p.m.