Man pages for Sz-Tim/gbPopMod
Mechanistic species distribution model for glossy buckthorn (*Frangula alnus*)
| antilogit | Antilogit function |
| calc_lambda | Fill population matrices and calculate lambda in each cell |
| cell_E | Aggregate compositional data within each cell |
| cut_assign | Assign cells to convert a proportion of forest.col to open... |
| cut_forest | Change forested land cover to open invasible |
| emulate_sensitivity | Emulate global sensitivity analysis output |
| emulation_summary | Summarize BRT emulations |
| expand_cnpy | Expand to all combinations of canopy parameter ranges... |
| expand_LCs | Expand land cover-based parameter ranges (deprecated) |
| expand_v | Expand all pairwise combinations of two vectors into one... |
| get_pt_id | Get the id of the cell containing specified coordinates |
| global_sensitivity | Run global sensitivity analysis |
| grow_lambda | Local population growth: lambda-based (a la Merow 2011) |
| iterate_pop | Implement management and iterate buckthorn populations for... |
| iterate_pop_econ | Implement management and iterate buckthorn for one time step... |
| ldd_disperse | Long distance dispersal |
| logit | Logit function |
| make_fruits | Local fruit production |
| make_grid | Generate landscape grid |
| make_plots_final_t | Save plots of final buckthorn distribution |
| make_plots_gifs | Save gifs of buckthorn distribution through time |
| make_plots_gridSummary | Save plots of buckthorn distribution summaries |
| make_plots_lc | Save plots of initial land cover proportions |
| new_seedlings | Seed germination & establishment |
| pop_init | Initialize populations randomly |
| run_sensitivity | Run univariate sensitivity analyses |
| run_sim | Run demographic simulation |
| run_sim_lambda | Run lambda simulation |
| save_abundances | Save simulation output as .rds files |
| save_pars | Save global and control parameters as .rds files |
| sdd_disperse | Short distance dispersal |
| sdd_lambda | Short distance dispersal: lambda-based |
| sdd_set_probs | Set short distance dispersal probabilities |
| sdd_update_probs | Update short distance dispersal probabilities |
| set_control_p | Set buckthorn control (management) treatment parameters |
| set_g_p | Set global parameters |
| set_sensitivity_pars | Set parameters for global sensitivity analysis |
| trt_assign | Assign landowner treatments |
| trt_econ | Implement cutting & spraying treatments for econ simulations |
| trt_ground | Implement ground cover treatments |
| trt_manual | Implement cutting & spraying treatments |
