README.md

In TEST-BNL/R-Canopy_Photosynthesis: Canopy photosynthesis testbed

R-Canopy_Photosynthesis

Testbed for canopy scaling and modeling of photosynthesis and GPP

Corresponding authors

Drs. Jin Wu and Shawn Serbin

Environmental and Climate Sciences Department

Brookhaven National Laboratory

[e-mail]; [e-mail]

Installation

Easiest way to install is via install_github from the devtools package.

install.packages('devtools') # if you haven't already installed this package and dependencies
library(devtools) # load the library
install_github("TEST-BNL/R-Canopy_Photosynthesis") # install the package from GitHub

If you want a specific branch, do install_github(..., ref="<branch>").

From there, you should be able to load the package in your typical R session.

Quick example runs (after installation)

# Leaf level responses to light and temperature
file <- system.file("examples/Example_Leaf_Photosynthesis.R",package="CanopyPhotosynthesis")
source(file)
# This should generate two plots, one showing the An vs PAR and the second showing the temperature sensitivities of photosynthesis and key parameters such as Vcmax, Jmax, and Rd

# MORE IN DEVELOPMENT

For more information, see the vignette (vignettes/pecanrtm.vignettes.Rmd). [UNDER DEVELOPMENT]

TEST-BNL/R-Canopy_Photosynthesis documentation built on Nov. 13, 2020, 6:37 p.m.