melonProbes450k: Dataframe containing potentially bad probes for 450K...

In TJGorrie/melonProbes: melonProbes

Description

Dataframe containing potentially bad probes for 450K microarray data

Usage

data(melonProbes450k)

Format

A data frame with 800,000 rows and 9 variables:

Zhou_HG19

Logical Vector of CpGs that are marked TRUE in Zhou's General Masking column for HG19

Zhou_HG38

Logical Vector of CpGs that are marked TRUE in Zhou's General Masking column for HG38

PercLowVariation

Numeric Vector describing the number of times a CpG is ranked in bottom 5th percentile of variation

PercBadBc

Numeric Vector describing the number of times a CpG has a beadcount 4 in 5 of samples.

PercBadPv

Numeric Vector describing the number of times a CpG has a detection p value 0.05 in 1 of samples.

Source

http://zwdzwd.github.io/InfiniumAnnotation

Pidsley, R., Zotenko, E., Peters, T.J. et al. Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling. Genome Biol 17, 208 (2016) doi:10.1186\/s13059-016-1066-1

Examples

    data(melonProbes450k)

TJGorrie/melonProbes documentation built on May 28, 2021, 1:45 p.m.