Files in TJN25/comparativeSRA
Runs steps involved in the comparativeSRA analysis project
DESCRIPTION
NAMESPACE
R/alignAndCombine.R
R/bacterialCodonsFormat.R
R/bacterialColumnNames.R
R/bacterialDinucleotideFormat.R
R/buildReferenceLookup.R
R/cmscanToGff.R
R/codonSummary.R
R/collapseAlignment.R
R/createAASummary.R
R/dinucleotideSummary.R
R/getTreeLengths.R
R/hello.R
R/intersect_all.R
R/mauvePlotColourChange.R
R/mergeSRA.R
R/mergeSRAFast.R
R/phageCodonsFormat.R
R/phageColumnNames.R
R/phageDinucleotideFormat.R
R/plotCodons.R
R/plotDinuclteotides.R
R/plotGC.R
R/printRemaining.R
R/printRunningTime.R
R/removeCDSregions.R
R/reorderGFF.R
R/reorderSraPlot.R
R/rnaPeakCalling.R
R/rnaPeakCallingHeader.txt
R/scoreRNAReadDepth.R
R/sraSmoothAndSort.R
comparativeSRA.Rproj
man/alignAndCombine.Rd
man/bacterialCodonsFormat.Rd
man/bacterialColumnNames.Rd
man/bacterialDinucleotideFormat.Rd
man/buildReferenceLookup.Rd
man/cmscanToGff.Rd
man/codonSummary.Rd
man/collapseAlignment.Rd
man/createAASummary.Rd
man/dinucleotideSummary.Rd
man/getTreeLengths.Rd
man/hello.Rd
man/interset_all.Rd
man/mauvePlotColourChange.Rd
man/mergeSRA.Rd
man/phageCodonsFormat.Rd
man/phageColumnNames.Rd
man/phageDinucleotideFormat.Rd
man/plotCodons.Rd
man/plotDinucleotides.Rd
man/plotGC.Rd
man/printRemaining.Rd
man/printRunningTime.Rd
man/removeCDSregions.Rd
man/reorderGFF.Rd
man/reorderSraPlot.Rd
man/rnaPeakCalling.Rd
man/scoreRNAReadDepth.Rd
man/sraSmoothandsort.Rd
tests/testthat/test_buildReferenceLookup.R
tests/testthat/test_collapseAignment.R
tests/testthat/test_reorderGFF.R
