buildReferenceLookup: buildReferenceLookup Function

In TJN25/comparativeSRA: Runs steps involved in the comparativeSRA analysis project

Description

buildReferenceLookup Function

Usage

buildReferenceLookup(
  reference,
  seqA = 1,
  seqB = 2,
  remove.missing = T,
  collapse.alignment = T,
  quiet = F
)

Arguments

reference	The file reference positons
seqA	which columns to use for the first sequence
seqB	which columns to use for the second sequence
remove.missing	remove rows that are not conserved
collapse.alignment	combines segments which can be combines once other alignments are removed

Examples

buildReferenceLookup()

TJN25/comparativeSRA documentation built on March 9, 2020, 12:13 a.m.