TXiang-lab/blupADC
blup-Associated Data Cleaner

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Search the TXiang-lab/blupADC package
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Functions
185
Source code
19
Man pages
1
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TXiang-lab/blupADC: blup-Associated Data Cleaner
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API

API for TXiang-lab/blupADC
blup-Associated Data Cleaner

Global functions
APY_cpp Source code
APY_inverse_cpp Source code
APY_inverse_memory_cpp Source code
APY_memory_cpp Source code
BLUPF90_generate_prior Source code
DataFrame_to_arma Source code
Deviation_matrix_cpp Source code
Deviation_matrix_memory_cpp Source code
Dominance_matrix_cpp Source code
Dominance_matrix_memory_cpp Source code
G_matrix_cpp Source code
G_matrix_memory_cpp Source code
Hotelling_test Source code
K_matrix_cal_memory Source code
LR_evaluation Source code
Multitasks_run_DMU_BLUPF90 Source code
NumericMatrix_to_arma Source code
allele_get_haplotype_set_short Source code
bigmemory_double_type Source code
bigmemory_object_convert Source code
blupADC Man page
blupADC-package Man page
blupADC_software_path Source code
blupf90_get_random_regression Source code
blupf90_to_hapmap_cpp Source code
blupf90_to_numeric_cpp Source code
blupf90_to_numeric_memory_cpp Source code
blupf90_to_ped_cpp Source code
blupf90_to_vcf_cpp Source code
cal_blupf90_se_reml Source code
cal_breed_pro Source code
cal_corrected_phe Source code
cal_corrected_phe_BLUPF90 Source code
cal_dmu_se_reml Source code
cal_homo_inbred_cpp Source code
cal_homo_inbred_memory_cpp Source code
cal_kinship Source code
calculate_debv Source code
calculate_debv_old Source code
calculate_reliability Source code
check_blupADC Source code
cumulativeSum Source code
debv_method1 Source code
define_block_window_kb_cpp Source code
delete_bigmemory_file Source code
delete_bigmemory_file_cpp Source code
detect_pca_plot Source code
fixed_openMP Source code
full_generation_conversion Source code
gene_dropping_D Source code
gene_dropping_memory_D Source code
generate_DIR Source code
generate_dmu_bat Source code
generate_renum Source code
generate_social_phe Source code
geno_check Source code
geno_format Source code
geno_qc_impute Source code
genotype_data_combine Source code
get_X_Y_position Source code
get_X_Y_position_old Source code
get_allele Source code
get_bigmemory_address Source code
get_blupf90_allele_string_hapmap Source code
get_blupf90_allele_string_numeric Source code
get_blupf90_allele_string_phased_vcf Source code
get_blupf90_allele_string_plink Source code
get_blupf90_allele_string_unphased_haplotype Source code
get_blupf90_allele_string_unphased_vcf Source code
get_family Source code
get_generation Source code
get_generation_colnames Source code
get_haplotype_block Source code
get_haplotype_set_short Source code
get_image Source code
get_input_data_type Source code Source code
get_nested Source code
get_nodes Source code
get_offspring_generation_cpp Source code
get_output_type_number Source code
get_rest_id Source code
get_vcf_header Source code
ggped Source code
haplotype_convertion Source code
hapmap_convertion Source code
hapmap_to_VCF_cpp Source code
hapmap_to_VCF_cpp1 Source code
hapmap_to_blupf90_cpp Source code
hapmap_to_numeric_cpp Source code
hapmap_to_numeric_memory_cpp Source code
hapmap_to_ped_cpp Source code
inner_matrix Source code
judge_character_string Source code
makeA_cpp Source code
makeA_memory_cpp Source code
makeA_meta_cpp Source code
makeA_metafounder_cpp Source code
makeA_tmp_cpp Source code
makeAinv_cpp Source code
makeAinv_memory_cpp Source code
makeD_cpp Source code
makeD_memory_cpp Source code
makeHA_cpp Source code
makeHA_memory_cpp Source code
makeHA_metafounder_cpp Source code
makeHA_metafounder_memory_cpp Source code
makeHD_cpp Source code
makeHD_gene_dropping_cpp Source code
makeInbreeding_cpp Source code
makeInbreeding_memory_cpp Source code
make_bigmemory_object_address_cpp Source code
make_bigmemory_object_cpp Source code
match_all_sibs Source code
match_fullsibs Source code
match_offsprings Source code
match_offsprings_new Source code
match_parents Source code Source code
match_sibs Source code
matrix_col3 Source code
matrix_col3_memory Source code
matrix_col3_memory_alt Source code
matrix_col3_memory_old Source code
matrix_col3_old Source code
my.solve Source code
my_cal_se Source code
numeric_overlap_cpp Source code
numeric_to_blupf90_cpp Source code
numeric_to_hapmap_cpp Source code
numeric_to_ped_cpp Source code
numeric_to_vcf_cpp Source code
pair_base_factor_cpp Source code
paste_vec_short Source code
ped_record_check Source code
ped_to_hapmap_cpp Source code
pedigree_format_convertion Source code
phased_haplotype_to_blupf90_cpp Source code
phased_haplotype_to_blupf90_memory_cpp Source code
phased_haplotype_to_numeric_cpp Source code
phased_haplotype_to_numeric_memory_cpp Source code
phased_vcf_blupf90_memory_cpp Source code
phased_vcf_to_Plink_cpp Source code
phased_vcf_to_blupf90_cpp Source code
phased_vcf_to_haplotype_cpp Source code
phased_vcf_to_haplotype_memory_cpp Source code
phased_vcf_to_numeric_cpp Source code
phased_vcf_to_numeric_memory_cpp Source code
plink_convertion Source code
plink_to_blupf90_cpp Source code
plink_to_numeric_cpp Source code
plink_to_numeric_memory_cpp Source code
plink_to_vcf_cpp Source code
plot_dmu_blupf90_prior Source code
plot_ped_single_pedigree Source code
purify_vcf_cpp Source code
qmsim_to_blupf90_cpp Source code
qmsim_to_boa_cpp Source code
qmsim_to_hapmap_cpp Source code
qmsim_to_numeric_cpp Source code
qmsim_to_ped_cpp Source code
qmsim_to_vcf_cpp Source code
rbind_fill Source code
run_BLUPF90 Source code
run_DMU Source code
show_ped_type Source code
single_base_factor_cpp Source code
single_pedigree Source code
single_pedigree_cpp Source code
test123 Source code
trace_pedigree Source code
union_cpp Source code
union_dir Source code
unphased_haplotype_to_blupf90_cpp Source code
unphased_haplotype_to_blupf90_memory_cpp Source code
unphased_haplotype_to_numeric_cpp Source code
unphased_haplotype_to_numeric_memory_cpp Source code
unphased_vcf_to_blupf90_cpp Source code
unphased_vcf_to_blupf90_unopenMP Source code
unphased_vcf_to_numeric_cpp Source code
unphased_vcf_to_numeric_memory_cpp Source code
user_define_phased_vcf_to_cpp Source code
vcf_convertion Source code
vcf_to_hapmap_cpp Source code
vcf_to_plink_cpp Source code
TXiang-lab/blupADC documentation built on Nov. 27, 2024, 3:26 a.m.

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