convertMSigDB: convert ids of MSigDB to another organism
In TamasKiss26/MSigDBOrthology:
Description
This function gets two files: one is downloaded from the MSigDB, it is .gmt file, the other is a .txt file downloaded form the HCOP database.
Usage
1
convertMSigDB(msigdbPath, hcopPath, idType = "ensembl")
Arguments
msigdbPath
path to the MSigDB file
idType
'entrez' or 'ensembl'
hcopPaht
path to the hcop annotation file
TamasKiss26/MSigDBOrthology documentation built on May 26, 2020, 1:25 a.m.
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Description
This function gets two files: one is downloaded from the MSigDB, it is .gmt file, the other is a .txt file downloaded form the HCOP database.
Usage
1 | convertMSigDB(msigdbPath, hcopPath, idType = "ensembl")
|
Arguments
msigdbPath |
path to the MSigDB file |
idType |
'entrez' or 'ensembl' |
hcopPaht |
path to the hcop annotation file |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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