API for TapscottLab/countRepeats
Hit counts and enrichment/depletion analysis tools for repeat elements

Global functions
bamToGAlignments Source code
countHits Source code
countRepeats Source code
countSubjectHits Source code
do_hyperGeom Source code
finerSplitByRepeatFamily Source code
getElementMetaData Source code
getSigRepName Source code
heatmapRepName Source code
processFeatures Source code
rmskStats Source code
rmskStatsReport Source code
rmskStatsWrapper Source code
scatterLog2PerGroup Source code
splitByRepName Source code
summarizeRepNameCount Source code
summary Source code
vizDepleted Source code
vizEnriched Source code
vizSigFreqOnClass Source code
vizSigFreqOnFamily Source code
TapscottLab/countRepeats documentation built on May 3, 2018, 10:24 p.m.