Hit counts and enrichment/depletion analysis tools for repeat elements

Global functions | |
---|---|

bamToGAlignments | Source code |

countHits | Source code |

countRepeats | Source code |

countSubjectHits | Source code |

do_hyperGeom | Source code |

finerSplitByRepeatFamily | Source code |

getElementMetaData | Source code |

getSigRepName | Source code |

heatmapRepName | Source code |

processFeatures | Source code |

rmskStats | Source code |

rmskStatsReport | Source code |

rmskStatsWrapper | Source code |

scatterLog2PerGroup | Source code |

splitByRepName | Source code |

summarizeRepNameCount | Source code |

summary | Source code |

vizDepleted | Source code |

vizEnriched | Source code |

vizSigFreqOnClass | Source code |

vizSigFreqOnFamily | Source code |

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