API for TapscottLab/domainCalling
Tools for domain calling using csaw pipeline
| Global functions | |
|---|---|
| .RangedSEToBed | Source code |
| .RangedSEToXLS | Source code |
| .addColData | Source code |
| .filterByAvgCount | Source code |
| .filterByFragmentLength | Source code |
| .filterByGenomeEnrichment | Source code |
| .getDomianTagMatrix | Source code |
| addSpikeFactor | Source code |
| alternativeAnnotation | Source code |
| bedGraphToBigWig | Source code |
| calcDomainFPKM | Source code |
| checkSampleInfoInput | Source code |
| csawDomainCalling | Source code |
| domainCallingFromBed | Source code |
| estimateSpikeFactor | Source code |
| getAnnotationFromGR | Source code |
| getAnnotationFromGR.2 | Source code |
| getCountBamPerSample | Source code |
| getDomainTagMatrixPerSample | Source code |
| getLogCPM | Source code |
| getSampleInfo | Source code |
| getSpikeNormFactor | Source code |
| makeFragCovPerSample | Source code |
| makeFragCoverageTrack | Source code |
| removeDuplicates | Source code |
| sanitizeAnnotation | Source code |
| saveDomains | Source code |
