API for TapscottLab/domainCalling
Tools for domain calling using csaw pipeline

Global functions
RangedSEToBed Source code
RangedSEToXLS Source code
addColData Source code
addSpikeFactor Source code
alternativeAnnotation Source code
bedGraphToBigWig Source code
calcDomainFPKM Source code
checkSampleInfoInput Source code
csawDomainCalling Source code
domainCallingFromBed Source code
estimateSpikeFactor Source code
filterByAvgCount Source code
filterByFragmentLength Source code
filterByGenomeEnrichment Source code
getAnnotationFromGR Source code
getAnnotationFromGR.2 Source code
getBamInfoPerSample Source code
getCountBamPerSample Source code
getDomainTagMatrixPerSample Source code
getDomianTagMatrix Source code
getLogCPM Source code
getSampleInfo Source code
getSpikeNormFactor Source code
makeFragCovPerSample Source code
makeFragCoverageTrack Source code
removeDuplicates Source code
sanitizeAnnotation Source code
saveDomains Source code
TapscottLab/domainCalling documentation built on Jan. 10, 2019, 7:37 p.m.