| bgzip | Bgzips a VCF file |
| call_sv_manta | Call Somatic/Germline structural variants using Manta This... |
| call_variants_strelka | Call Somatic/Germline single nucleotide variants using... |
| get_file_extension | Get the extension of a file |
| get_sample_name | Get the name of a sample from input file name |
| install_tools | Install all tools locally |
| intersect_sample_name | Get sample name from two sample replicates |
| tab_indx | Index tab separated genomic regions |
| vcf_filter_variants | VCF filtering using bcftools |
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