tab_indx: Index tab separated genomic regions
In TearsWillFall/RandomCode: What the Package Does (One Line, Title Case)
Description
This function takes a .vcf.bgz tab separated genomic region file and generates an index for it
Usage
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tab_indx(
bin_path = system.file("tools/htslib/bin", "tabix", package = "RandomCode"),
file = "",
verbose = FALSE
)
Arguments
bin_path
REQUIRED Path to bcftools binary. Default tools/htslib/tabix.
file
REQUIRED Path to VCF file to index.
verbose
OPTIONAL Enables progress messages. Default False.
TearsWillFall/RandomCode documentation built on Dec. 18, 2021, 4:06 p.m.
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Description
This function takes a .vcf.bgz tab separated genomic region file and generates an index for it
Usage
1 2 3 4 5 | tab_indx(
bin_path = system.file("tools/htslib/bin", "tabix", package = "RandomCode"),
file = "",
verbose = FALSE
)
|
Arguments
bin_path |
REQUIRED Path to bcftools binary. Default tools/htslib/tabix. |
file |
REQUIRED Path to VCF file to index. |
verbose |
OPTIONAL Enables progress messages. Default False. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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