R/data.R

In TedCCLeung/CFH1:

#' Raw count matrix
#'
#' @format A data frame with 32833 rows and 16 variables:
#' #' \describe{
#'   \item{gene_id}{Gene TAIR ID}
#'   \item{CFHdF_1}{CFH1 decoy}
#'   \item{CFHdF_2}{CFH1 decoy}
#'   \item{CFHdF_3}{CFH1 decoy}
#'   \item{COL_1}{Columbia wild type}
#'   \item{COL_2}{Columbia wild type}
#'   \item{COL_3}{Columbia wild type}
#'   \item{cfh123_1}{cfh triple mutant}
#'   \item{cfh123_2}{cfh triple mutant}
#'   \item{cfh123_3}{cfh triple mutant}
#'   \item{cfh1_1}{cfh single mutant}
#'   \item{cfh1_2}{cfh single mutant}
#'   \item{cfh1_3}{cfh single mutant}
#'   \item{PIF3OX_1}{PIF3 overexpression}
#'   \item{PIF3OX_2}{PIF3 overexpression}
#'   \item{PIF3OX_3}{PIF3 overexpression}
#' }
"gene_count_matrix"


#' Transcript count matrix
#'
#' @format A data frame with 32833 rows and 16 variables:
#' #' \describe{
#'   \item{transcript_id}{Gene TAIR ID}
#'   \item{CFHdF_1}{CFH1 decoy}
#'   \item{CFHdF_2}{CFH1 decoy}
#'   \item{CFHdF_3}{CFH1 decoy}
#'   \item{COL_1}{Columbia wild type}
#'   \item{COL_2}{Columbia wild type}
#'   \item{COL_3}{Columbia wild type}
#'   \item{cfh123_1}{cfh triple mutant}
#'   \item{cfh123_2}{cfh triple mutant}
#'   \item{cfh123_3}{cfh triple mutant}
#'   \item{cfh1_1}{cfh single mutant}
#'   \item{cfh1_2}{cfh single mutant}
#'   \item{cfh1_3}{cfh single mutant}
#'   \item{PIF3OX_1}{PIF3 overexpression}
#'   \item{PIF3OX_2}{PIF3 overexpression}
#'   \item{PIF3OX_3}{PIF3 overexpression}
#' }
"transcript_count_matrix"