run_master: Function to perform motif enrichment pipeline from motifs and...

In TedCCLeung/PhMotif:

Function to perform motif enrichment pipeline from motifs and sequences.

Description

Function to perform motif enrichment pipeline from motifs and sequences.

Usage

run_master(
  output_dir,
  motifs,
  sequences,
  skip_input = FALSE,
  skip_mapping = FALSE,
  skip_enrich = FALSE,
  skip_heatmap = FALSE
)

Arguments

output_dir	Character. Output directory.
motifs	Either a character vector of full paths to .meme motifs files, or a list of universalmotif objects.
sequences	Either a character vector of full paths to .fa DNA sequence files, of a list of Biostring DNAStringSet / DNAString objects.
skip_input	skip input
skip_mapping	skip mapping
skip_enrich	skip enrich
skip_heatmap	skip heat map

Value

None.

TedCCLeung/PhMotif documentation built on May 24, 2022, 12:02 a.m.