create_day0_qc_flowchart: Create a Flowchart Illustrating Cleaning Process for Day 0...
In Thaliehln/timci: Data management and visualisation for the TIMCI project

View source: R/create_cleaning_flowcharts.R

create_day0_qc_flowchart

R Documentation

Create a Flowchart Illustrating Cleaning Process for Day 0 Data (TIMCI-specific)

Description

This function generates a flowchart diagram illustrating the cleaning process for Day 0 data specific to TIMCI. The flowchart visually represents the various stages and outcomes of data processing, including exclusion, editing, and checks for data quality related to Day 0 records.

Usage

create_day0_qc_flowchart(
  n_raw_day0_records,
  n_nonvalid_fid_records,
  n_incorrect_enroldate_records,
  n_dropped_true_duplicate_records,
  n_true_duplicate_detected,
  n_duplicate_records,
  n_dropped_duplicate_records,
  n_edited_duplicate_records,
  n_drug_edits,
  n_spo2_meas1_edits,
  n_spo2_meas2_edits,
  n_negative_illness_onset,
  n_missing_cp,
  n_missing_diagnosis,
  n_missing_referral_cg,
  n_cleaned_day0_records
)

Arguments

`n_raw_day0_records`	Initial number of Day 0 records in the dataset.
`n_nonvalid_fid_records`	Number of records with a non-valid facility ID.
`n_incorrect_enroldate_records`	Number of records with an incorrect enrolment date.
`n_dropped_true_duplicate_records`	Number of records dropped due to true duplication.
`n_true_duplicate_detected`	Number of true duplicate records detected.
`n_duplicate_records`	Number of records with duplicated child IDs.
`n_dropped_duplicate_records`	Number of records dropped due to duplicated child IDs.
`n_edited_duplicate_records`	Number of records edited due to duplicated child IDs.
`n_drug_edits`	Number of records with re-entered structured drug data.
`n_spo2_meas1_edits`	Number of records with corrected SpO2 measure 1 (India only).
`n_spo2_meas2_edits`	Number of records with corrected SpO2 measure 2 (India only).
`n_negative_illness_onset`	Number of records with a negative illness onset.
`n_missing_cp`	Number of records with missing clinical presentation.
`n_missing_diagnosis`	Number of records with missing diagnosis.
`n_missing_referral_cg`	Number of records with no referral information from caregiver.
`n_cleaned_day0_records`	Number of records after cleaning.