bin_taxa: Bin observations by taxa according to some common factor This...

In TheAlexBarth/EcotaxaTools: Data wrangling and post-validation processing programs

Bin observations by taxa according to some common factor This version allows for summing over some factor like dry mass or volume

Description

It will sum for each individual in a depth bin by taxa

Usage

bin_taxa(
  df,
  depth_breaks,
  zooscan = F,
  cat_col = NULL,
  func_col = "taxo_name",
  func = length,
  max_d = NULL,
  force_bins = F
)

Arguments

df	a data frame should have a taxo_name, name, or object_annotation_category column
depth_breaks	the limits of what bins should be made
zooscan	if the df is a zooscan export set to true, default false
cat_col	a category other than taxa to bin by
func_col	a single character vector of the value to apply function to; esd, biomass, drymass, etc
func	the function to apply
max_d	the maximum possible depth for a bin
force_bins	set to true if you want to ensure observations for all 0's

Author(s)

Alex Barth

TheAlexBarth/EcotaxaTools documentation built on Nov. 14, 2024, 8:27 p.m.