Files in TheJacksonLaboratory/GeneVyuha
GeneVyuha is a systems biology tool to study the role of noise and parameter variation in gene regulatory circuits.
.Rbuildignore
.gitignore
DESCRIPTION
GeneVyuha.Rproj
LICENSE.md
NAMESPACE
NEWS.md
R/RcppExports.R
R/calcSimilarity.R
R/racipeSet.R
R/runGeneVyuha.R
R/utility.R
README.md
app.R
data/configuration.RDS
data/database.RDS
data/demoNetwork.RDS
data/simulationData.RDS
data/storedNetworks.RDS
inputs/EMT_npjSystemsBiology.tpo
inputs/EMT_plosCompBio.tpo
inputs/FiveCoupledToggleSwitches.tpo
inputs/RepressilatorSelfActivation.tpo
inputs/ToggleSwitch.tpo
inputs/ToggleSwitchOneActivation.tpo
inputs/ToggleSwitchTwoActivation.tpo
inst/shiny-examples/GeneVyuha/about.R
inst/shiny-examples/GeneVyuha/about.md
inst/shiny-examples/GeneVyuha/app.R
inst/shiny-examples/GeneVyuha/data/database.RDS
inst/shiny-examples/GeneVyuha/data/storedNetworks.RDS
inst/shiny-examples/GeneVyuha/database.R
inst/shiny-examples/GeneVyuha/database/EMT_npjSystemsBiology.RDS
inst/shiny-examples/GeneVyuha/database/EMT_plosCompBio.RDS
inst/shiny-examples/GeneVyuha/database/RepressilatorSelfActivation_TS.RDS
inst/shiny-examples/GeneVyuha/database/ToggleSwitch.RDS
inst/shiny-examples/GeneVyuha/database/ToggleSwitch_stochastic_TS.RDS
inst/shiny-examples/GeneVyuha/databaseServer.R
inst/shiny-examples/GeneVyuha/demo.RDS
inst/shiny-examples/GeneVyuha/geneVyuhaServer.R
inst/shiny-examples/GeneVyuha/geneVyuhaUi.R
inst/shiny-examples/GeneVyuha/inputs/EMT_npjSystemsBiology.tpo
inst/shiny-examples/GeneVyuha/inputs/EMT_plosCompBio.tpo
inst/shiny-examples/GeneVyuha/inputs/FiveCoupledToggleSwitches.tpo
inst/shiny-examples/GeneVyuha/inputs/RepressilatorSelfActivation.tpo
inst/shiny-examples/GeneVyuha/inputs/ToggleSwitch.tpo
inst/shiny-examples/GeneVyuha/inputs/ToggleSwitchOneActivation.tpo
inst/shiny-examples/GeneVyuha/inputs/ToggleSwitchTwoActivation.tpo
inst/shiny-examples/GeneVyuha/modelExplorer.R
inst/shiny-examples/GeneVyuha/modelExplorerServer.R
inst/shiny-examples/GeneVyuha/modules.R
inst/shiny-examples/GeneVyuha/racipe.R
inst/shiny-examples/GeneVyuha/racipeServer.R
inst/shiny-examples/GeneVyuha/rsconnect/shinyapps.io/vivekkohar/GeneVyuha.dcf
inst/shiny-examples/GeneVyuha/updataDatabase.R
inst/shiny-examples/GeneVyuha/www/Database.png
inst/shiny-examples/GeneVyuha/www/GeneNetworkExplorerS.png
inst/shiny-examples/GeneVyuha/www/JAX.gif
inst/shiny-examples/GeneVyuha/www/JAX.png
inst/shiny-examples/GeneVyuha/www/JAX2.gif
inst/shiny-examples/GeneVyuha/www/RACIPE.png
inst/shiny-examples/GeneVyuha/www/geneVyuha2.gif
inst/shiny-examples/GeneVyuha/www/geneVyuha2L.gif
inst/shiny-examples/GeneVyuha/www/sRACIPE.png
man/.Rapp.history
man/hello.Rd
man/loadNetworkFile.Rd
man/racipeSet-class.Rd
man/setNetwork.Rd
rsconnect/shinyapps.io/vivekkohar/GeneVyuha.dcf
src/Makevars
src/RcppExports.cpp
src/generateThresholds.cpp
src/header.cpp
src/header.h
src/simulateGrnEM.cpp
src/simulateNetwork.cpp
