setNetwork: Loads the network/topology file.
In TheJacksonLaboratory/GeneVyuha: GeneVyuha is a systems biology tool to study the role of noise and parameter variation in gene regulatory circuits.
Description
Usage
Arguments
Value
Examples
Description
The network file should contain three columns with headers,
"Source" "Target" "Type"
Here "Source" and "Target" are the names of the genes and "Type" refers to
the regulation, "1" if source activates target and "2" if source inhibits
target.
Usage
1
setNetwork(object, network, networkName)
Arguments
networkFile
Network file name
Value
Network as a list
Examples
1
2
3
4
network <- readRDS("data/demoNetwork.RDS")
demoNetwork <- setNetwork(demoNetwork, network)
demoNetwork <- racipeSet()
demoNetwork <- setNetwork(demoNetwork, "inputs/demo.net")
TheJacksonLaboratory/GeneVyuha documentation built on May 5, 2019, 2:44 a.m.
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Description Usage Arguments Value Examples
Description
The network file should contain three columns with headers, "Source" "Target" "Type" Here "Source" and "Target" are the names of the genes and "Type" refers to the regulation, "1" if source activates target and "2" if source inhibits target.
Usage
1 | setNetwork(object, network, networkName)
|
Arguments
networkFile |
Network file name |
Value
Network as a list
Examples
1 2 3 4 | network <- readRDS("data/demoNetwork.RDS")
demoNetwork <- setNetwork(demoNetwork, network)
demoNetwork <- racipeSet()
demoNetwork <- setNetwork(demoNetwork, "inputs/demo.net")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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