Submission-class: Submission constructor

In TheJacksonLaboratory/jaxsubmit: Submit R Scripts to Slurm Clusters Remotely

Description

An S4 class used to create a job submission.

Slots

script.file

Relative path to the script

cluster

Address of cluster you want to submit to.

profile

A JobProfile type object.

script.args

String containing all arguments to the submitted Rscript to be executed remotely on the cluster.

conda

String containing the name of a valid conda environment on the cluster to be used to execute R.

singularity

String path or URI of a Singularity container to execute Rscript inside of.

r.bin.args

String containing all arguments to pass to the Rscript binary.

r.data

String containing the name of an R data object in the search path.

local.data

String containing a list of paths to one or more local file(s). WARNING: Large files may take a long time to sync.

target.dir

Path to directory to create .slurmsubmit/ directory.

See Also

JobProfile, submit

TheJacksonLaboratory/jaxsubmit documentation built on Dec. 18, 2021, 4:09 p.m.