Files in TheJacksonLaboratory/sRACIPE_dev
Systems biology tool to simulate gene regulatory circuits
.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/RcppExports.R
R/calcSimilarity.R
R/deprecatedFunctions.R
R/loadConfig.R
R/loadTopology.R
R/plot.R
R/sRACIPE.R
R/simulateGRC.R
README.md
data/configuration.rda
data/demoCircuit.rda
inputs/EMT_npjSystemsBiology.tpo
inputs/EMT_plosCompBio.tpo
inputs/FiveCoupledToggleSwitches.tpo
inputs/ToggleSwitch.tpo
inputs/ToggleSwitchOneActivation.tpo
inputs/ToggleSwitchTwoActivation.tpo
inputs/circuit.txt
inputs/demoCircuit.txt
inputs/g2AB11.topo
inputs/sRACIPE.cfg
inputs/test.tpo
inputs/test1.tpo
inst/CITATION
man/.Rapp.history
man/ModelPvalue.Rd
man/NthMin.Rd
man/PermutedVar.Rd
man/SimulatedPValueAbs.Rd
man/SimulatedVarPValue.Rd
man/calcHeatmapSimilarity.Rd
man/densityPlot.Rd
man/density_plot.Rd
man/genParamNames.Rd
man/hello.Rd
man/inputs/demoCircuit.txt
man/knockdownAnalysis.Rd
man/loadCircuit.Rd
man/loadConfig.Rd
man/load_data.Rd
man/normalizeGE.Rd
man/overExprAnalysis.Rd
man/plotCircuit.Rd
man/plotData.Rd
man/plotParamBifur.Rd
man/plot_data_deterministic.Rd
man/plot_data_knockout_all.Rd
man/plot_data_knockout_single.Rd
man/plot_data_stochastic.Rd
man/plot_network.Rd
man/sRACIPE.Rd
man/sRACIPE_load_configuration.Rd
man/sRACIPE_load_topology.Rd
man/simulateGRC.Rd
sRACIPE.Rproj
src/Makevars
src/RcppExports.cpp
src/generateThresholds.cpp
src/header.cpp
src/header.h
src/readTopology.cpp
src/simulateGRC.cpp
src/steppers.cpp
vignettes/run_sRACIPE.R
vignettes/sRACIPE.Rmd
vignettes/sRACIPE.html
www/racipe.png
