plotParamBifur: Parameter bifurcation plots
In TheJacksonLaboratory/sRACIPE_dev: Systems biology tool to simulate gene regulatory circuits
Description
Plot the expression of the genes against parameter values
to understand the effect of parameters on the gene expressions.
Usage
1
2
Arguments
rSet
List. The list generated by simulateGRC function.
paramName
character. The name of the parameter to be plotted.
data
(optional) dataframe. Default rSet geneExpression. The data
to be plotted. For example, use rSet$stochasticSimulations$[noise] to plot
the stochastic data.
paramValue
(optional) Dataframe. The parameter values if rSet$params
is not to be used.
assignedClusters
(optional) Dataframe. The cluster assignment of data.
TheJacksonLaboratory/sRACIPE_dev documentation built on May 7, 2019, 8:16 a.m.
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Description
Plot the expression of the genes against parameter values to understand the effect of parameters on the gene expressions.
Usage
1 2 |
Arguments
rSet |
List. The list generated by |
paramName |
character. The name of the parameter to be plotted. |
data |
(optional) dataframe. Default rSet geneExpression. The data to be plotted. For example, use rSet$stochasticSimulations$[noise] to plot the stochastic data. |
paramValue |
(optional) Dataframe. The parameter values if rSet$params is not to be used. |
assignedClusters |
(optional) Dataframe. The cluster assignment of data. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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