plot_comm_trait_evolution: Plot the evolution of trait values in the community over...

In TheoPannetier/comrad: R implementation of a Competitive Radiation model

Plot the evolution of trait values in the community over generations

Description

Produces a hex-density plot of all trait values in the community over generations.

Usage

plot_comm_trait_evolution(
  comrad_tbl,
  generation_range = c(0, Inf),
  xgrain = 200,
  ygrain = 0.01,
  xlim = NULL,
  ylim = NULL,
  alpha = 0.95,
  hex_fill = "species"
)

Arguments

comrad_tbl	a tibble containing the output of a comrad simulation, as produced by run_simulation().
generation_range	numeric vector with length 2, supplying the first and last generation to plot from the dataset. Defaults to every generation in the table
xgrain	numeric, the width of hexes on the x-axis (generations)
ygrain	numeric, the width of hexes on the y-axis (trait)
xlim	numeric vector, the range of x-values, passed to ggplot::coord_cartesian() if not NULL.
ylim	numeric vector, the range of y-values, passed to ggplot::coord_cartesian() if not NULL.
alpha	numeric, the transparency of the hexes
hex_fill	character with two options, "counts" and "species". "counts" colours hexes by the count of individuals, and "species" by species identity.

Author(s)

Théo Pannetier

TheoPannetier/comrad documentation built on April 8, 2023, 8:06 a.m.