write_newick_str: Convert a species history table to a Newick string
In TheoPannetier/comrad: R implementation of a Competitive Radiation model
View source: R/write_newick_str.R
write_newick_str R Documentation
Convert a species history table to a Newick string
Description
Reads a tibble recording species birth, death and phylogenetic relations,
figures out the branch lengths and return a phylogenetic tree in Newick
format. Based on DDD::L2phylo().
Usage
write_newick_str(spp_tbl, include_stem = TRUE)
Arguments
spp_tbl
a table with phylogenetic information for each species, the
output of build_spp_tbl()
include_stem
logical, should the stem lineage and stem age be
included? If not, the string stops at crown lineages.
Author(s)
Théo Pannetier
TheoPannetier/comrad documentation built on April 8, 2023, 8:06 a.m.
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View source: R/write_newick_str.R
| write_newick_str | R Documentation |
Convert a species history table to a Newick string
Description
Reads a tibble recording species birth, death and phylogenetic relations,
figures out the branch lengths and return a phylogenetic tree in Newick
format. Based on DDD::L2phylo().
Usage
write_newick_str(spp_tbl, include_stem = TRUE)
Arguments
spp_tbl |
a table with phylogenetic information for each species, the
output of |
include_stem |
logical, should the stem lineage and stem age be included? If not, the string stops at crown lineages. |
Author(s)
Théo Pannetier
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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