Man pages for TheoPannetier/comsie
R implementation of a Competitive Radiation model
| apply_speciation | Resolve cladogenetic and anagetic speciation in the island... |
| build_comsie_spp_tbl | Extracts phylogenetic information from a 'comsie' simulation |
| build_newick_tbl | Convert a species history table to a Newick string |
| cat_sp_colour | Cat the name of a species, coloured by its hex colour code |
| create_mainland_comm | Create the mainland community |
| default_params_doc | Documentation for main parameters of the model |
| default_pars | Default parameter values |
| draw_comm_next_gen | Draw a new community from the current one |
| draw_nb_offspring_cpp | Draw a number of offspring given a fitness value |
| get_n_eff_cpp | Compute the effective population size |
| get_viable_z_range | Given K(z), return the min and max values of z viable for a... |
| pipe | Pipe operator |
| plot_zt | Plot trait distribution through time |
| read_comsie_tbl | Read simulation data |
| read_events_from_log | Read the sequence of events in a simulation from its log |
| read_immigration_from_log | Read immigration events and their time from a simulation's... |
| run_simulation | Run the simulation |
| sample_immigrant_from_mainland | Sample a number of individuals from a mainland community |
| simd_size | SIMD size |
| testargs | Assert a function argument is of correct type |
