API for TheoPannetier/hamr
Utility package for comrad
| Global functions | |
|---|---|
| %>% | Man page |
| are_params_retained | Source code |
| batch_id_to_job_ids | Man page Source code |
| cat_ml_log_hpc | Man page Source code |
| cat_sim_csv_hpc | Man page Source code |
| cat_sim_hpc | Man page |
| cat_sim_log_hpc | Man page Source code |
| compare_comrad_versions | Man page Source code |
| compare_comsie_versions | Man page Source code |
| complete_logbook_entries | Man page Source code |
| comrad_params_grid | Man page Source code |
| comrad_params_retained | Source code |
| comsie_params_grid | Man page Source code |
| copy_sim_csv_to_hd | Man page |
| copy_sim_log_to_hd | Man page |
| create_comrad_params | Man page Source code |
| create_comsie_initparsopt_daisie | Source code |
| create_comsie_initparsopt_ddd | Source code |
| create_comsie_params | Man page Source code |
| create_comsie_phylos_from_sim | Source code |
| ddd_ml_hpc | Source code |
| default_params_doc | Man page Source code |
| download_data_with_fossil_hpc | Man page |
| download_data_without_fossil_hpc | Man page |
| download_dd_ml_with_fossil_log_hpc | Man page Source code |
| download_dd_ml_with_fossil_rds_hpc | Man page Source code |
| download_dd_ml_without_fossil_log_hpc | Man page Source code |
| download_dd_ml_without_fossil_rds_hpc | Man page Source code |
| download_logbook_hpc | Man page Source code |
| download_sim_csv_hpc | Man page Source code |
| download_sim_hpc | Man page |
| download_sim_log_hpc | Man page Source code |
| extract_ggplot_data | Man page Source code |
| filter_aic_best | Man page Source code |
| filter_aic_best2 | Man page Source code |
| get_ml_rates | Man page Source code |
| get_nb_gens | Source code |
| get_walltime | Source code |
| has_job_completed | Man page Source code |
| install_DAISIE_hpc | Man page Source code |
| install_DDD_hpc | Man page Source code |
| install_comrad_hpc | Man page Source code |
| install_comsie_hpc | Man page Source code |
| is_dd_ml_log_on_hd | Man page Source code |
| is_dd_ml_log_on_local | Man page Source code |
| is_dd_ml_on_hd | Man page |
| is_dd_ml_on_local | Man page |
| is_dd_ml_rds_on_hd | Man page Source code |
| is_dd_ml_rds_on_local | Man page Source code |
| is_on_peregrine | Man page Source code |
| is_sim_csv_on_drive | Man page Source code |
| is_sim_csv_on_hd | Man page Source code |
| is_sim_csv_on_hpc | Man page Source code |
| is_sim_csv_on_local | Man page Source code |
| is_sim_log_on_drive | Man page Source code |
| is_sim_log_on_hd | Man page Source code |
| is_sim_log_on_hpc | Man page Source code |
| is_sim_log_on_local | Man page Source code |
| is_sim_on_drive | Man page |
| is_sim_on_hd | Man page |
| is_sim_on_hpc | Man page |
| is_sim_on_local | Man page |
| job_id_to_batch_id | Man page Source code |
| job_ids_from_string | Man page Source code |
| job_info | Man page Source code |
| job_runtime | Man page Source code |
| job_status | Man page Source code |
| nb_gens_vec_comsie | Source code |
| path_to_fabrika_hpc | Man page Source code |
| path_to_fabrika_local | Man page Source code |
| path_to_hd | Man page Source code |
| path_to_log_hd | Man page Source code |
| path_to_log_hpc | Man page Source code |
| path_to_log_local | Man page Source code |
| path_to_sim_hd | Man page Source code |
| path_to_sim_hpc | Man page Source code |
| path_to_sim_local | Man page Source code |
| plot_aicw | Man page Source code |
| plot_ml_rates | Man page Source code |
| queue | Man page Source code |
| read_logbook | Man page Source code |
| read_ml_with_fossil | Man page Source code |
| read_ml_without_fossil | Man page Source code |
| reduce_sampling_hpc | Man page Source code |
| rm_logbook_entries | Source code |
| rm_sim_csv_hpc | Source code |
| rm_sim_log_hpc | Source code |
| run_comrad_sim_hpc | Man page Source code |
| run_comsie_sim_hpc | Man page Source code |
| run_dd_ml_array | Source code |
| run_dd_ml_hpc_mean | Source code |
| run_dd_ml_hpc_median | Source code |
| run_dd_ml_hpc_simtrees | Source code |
| run_dd_ml_hpc_split | Source code |
| run_dd_ml_hpc_with_fossil | Source code |
| run_dd_ml_hpc_with_fossil2 | Source code |
| run_dd_ml_hpc_without_fossil | Source code |
| runtime_to_hms | Man page Source code |
| siga_to_keq | Source code |
| siga_vec_comsie | Source code |
| summary_last_gen_hpc | Man page Source code |
| update_dd_model_name_rds | Source code |
| update_logbook_drive | Man page Source code |
| update_model_name | Source code |
| upload_bash_hpc | Man page Source code |
| upload_rscript_hpc | Man page Source code |
| upload_sim_bash_hpc | Man page Source code |
| upload_sim_csv_drive | Man page Source code |
| upload_sim_drive | Man page |
| upload_sim_log_drive | Man page Source code |
| walltime_vec_comsie | Source code |
| write_path_to_fabrika_local | Man page Source code |
