bd_loglik_3.2: Loglikelihood for diversity-independent diversification model

In TheoPannetier/llDDD: Compare likelihood functions from different versions of DDD

Description

Copy of the bd_loglik() function from DDD.3.2. For syntax and details, see ?bd_loglik().

Usage

bd_loglik_3.2(pars1, pars2, brts, missnumspec, methode = "lsoda")

Arguments

pars1	numerical parameters of the model
pars2	setting parameters of the model
brts	A set of branching times, all positive.
missnumspec	The number of species that are in the clade but missing in the phylogeny
methode	The method used to solve the master equation, default is 'lsoda'.

Value

the loglikelihood value

Author(s)

Rampal S. Etienne, Bart Haegeman & Cesar Martinez

References

- Etienne, R.S. et al. 2012, Proc. Roy. Soc. B 279: 1300-1309, doi: 10.1098/rspb.2011.1439

- Etienne, R.S. & B. Haegeman 2012. Am. Nat. 180: E75-E89, doi: 10.1086/667574

TheoPannetier/llDDD documentation built on Feb. 24, 2020, 3:18 p.m.