README.md

In TheoreticalEcosystemEcology/coocc_not_inter: Research compendium

coocNotInteract

:book: "Co-occurrence is not evidence of ecological interaction" by F. G. Blanchet, K. Cazelles, D. Gravel - Research compendium. Code to reproduce analysis and figures in https://www.authorea.com/users/293493/articles/421501-co-occurrence-is-not-evidence-of-ecological-interaction.

Install

Our scripts are formatted as an R package to share them easily. As such, use the package remotes to install this package:

# if remotes is not installed, run
install.packages("remotes")
# then
remotes::install_github("TheoreticalEcosystemEcology/coocNotInteract")
library("coocNotInteract")

Reproduce

For any argument N in the manuscript, there is a corresponding function scr_argN that runs the analysis and export the corresponding figure. For instance for argument 1, run

scr_arg1()

To execute the entire analysis (for all arguments), use

pipeline()

TheoreticalEcosystemEcology/coocc_not_inter documentation built on March 31, 2020, 12:57 a.m.